If you are opening a gold IRA, three different businesses will touch your money. The dealer sells you the coins or bars. The custodian owns the account on paper, on your behalf. The depository keeps the metal in a vault. Most people only ever speak to the dealer, so the custodian and depository can feel invisible. They are not. Between them they charge most of the yearly fees you will pay for as long as you own the account.
This guide is about those two "invisible" businesses. We compare nine custodians that are often used for precious metals IRAs and five depositories, with fee tables, worked examples and the questions you should ask before you sign anything.
Here is what you will find below:
- A plain-English explanation of who does what: custodian vs dealer vs depository, who you pay and who you get to choose.
- What makes a custodian qualified to hold an IRA, and how to check the IRS list of approved non-bank trustees yourself.
- The three ways custodians price their services: flat, tiered and per-asset.
- Profiles of Equity Trust, STRATA Trust, Kingdom Trust, GoldStar Trust, Preferred Trust, Madison Trust, Advanta IRA, uDirect IRA and New Direction Trust, each with a fee table and honest notes on what we could and could not confirm.
- A 10-year fee comparison at $50,000, $100,000 and $250,000, with the math shown line by line.
- The main depositories - Delaware Depository, Brink's, IDS, the Texas Bullion Depository and the A-Mark/CNT option - and a storage cost table from $50,000 to $500,000 showing where percentage pricing overtakes a flat fee.
- Segregated vs commingled storage, insurance and audits, how to switch custodians, red flags, a question script and a checklist.
If you are new to the topic, our guide to what a gold IRA is and our complete gold IRA guide cover the basics. If you mainly want to know the total cost - including the dealer's markup, which is usually bigger than any custodian fee - read our gold IRA fees guide alongside this one.
A note on our numbers
Only one custodian fee schedule in this guide - Equity Trust's - comes straight from the custodian's own published document (Retail Fee Schedule FS-0001-03, revised November 6, 2025). A few others come from the custodian's own website as reported in October 2026. Many figures come from third-party review sites, which often disagree with each other and are sometimes out of date. We label every figure as reported, give its date where we have one, and point out conflicts. Treat every number here as a starting point for your own questions, not as a quote. Custodians change their fees, sometimes more than once a year.
None of this is financial advice. A gold IRA has real costs, pays no interest or dividends, and gold can fall sharply - it dropped about 29% between its record of roughly $5,595 an ounce on January 29, 2026 and a low near $3,994 in late June 2026. A fee-only adviser who does not sell metals can help you decide whether it fits your plan at all.



